Y box binding protein 1

YBX1
Available structures
PDB	Ortholog search: PDBe RCSB
List of PDB id codes
	1H95
Identifiers
Aliases	YBX1, BP-8, CSDA2, CSDB, DBPB, MDR-NF1, NSEP-1, NSEP1, YB-1, YB1, CBF-A, EFI-A, Y-box binding protein 1
External IDs	OMIM: 154030; MGI: 99146; HomoloGene: 88707; GeneCards: YBX1; OMA:YBX1 - orthologs
Gene location (Human)
Chr.	Chromosome 1 (human)
End	42,703,805 bp
Gene location (Mouse)
Chr.	Chromosome 4 (mouse)
End	119,151,801 bp
RNA expression pattern
	Top expressed in
	left testis; ; right testis; ; ganglionic eminence; ; ventricular zone; ; Achilles tendon; ; gastrocnemius muscle; ; muscle of thigh; ; skeletal muscle tissue; ; left ventricle; ; stromal cell of endometrium;
	Top expressed in
	Ileal epithelium; ; primitive streak; ; tail of embryo; ; abdominal wall; ; medial ganglionic eminence; ; endothelial cell of lymphatic vessel; ; seminiferous tubule; ; choroid plexus of fourth ventricle; ; migratory enteric neural crest cell; ; maxillary prominence;
	More reference expression data
	n/a
Gene ontology
Molecular function	DNA binding; DNA-binding transcription factor activity; DNA-binding transcription activator activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding; protein binding; RNA binding; nucleic acid binding; GTPase binding; double-stranded DNA binding; single-stranded DNA binding; chromatin binding; DNA-binding transcription factor activity, RNA polymerase II-specific;
Cellular component	cytoplasm; CRD-mediated mRNA stability complex; nuclear membrane; intracellular membrane-bounded organelle; U12-type spliceosomal complex; nucleoplasm; extracellular region; cytoplasmic stress granule; extracellular exosome; nucleus; histone pre-mRNA 3'end processing complex; cytosol; ribonucleoprotein complex;
Biological process	CRD-mediated mRNA stabilization; mRNA splicing, via spliceosome; regulation of transcription, DNA-templated; mRNA processing; transcription by RNA polymerase II; protein localization to cytoplasmic stress granule; transcription, DNA-templated; positive regulation of cell division; positive regulation of transcription by RNA polymerase II; in utero embryonic development; RNA splicing; negative regulation of striated muscle cell differentiation; negative regulation of transcription by RNA polymerase II; Notch signaling pathway; cellular response to interleukin-7;
	Sources:Amigo / QuickGO
Orthologs
	4904
	22608
	ENSG00000065978
	ENSMUSG00000028639
	P67809
	P62960
	NM_004559
	NM_011732
	NP_004550
	NP_035862
	Wikidata
View/Edit Human	View/Edit Mouse

Y box binding protein 1 also known as Y-box transcription factor or nuclease-sensitive element-binding protein 1 is a protein that in humans is encoded by the YBX1 gene.^[5] YBX1 is an RNA binding protein^[6] that stabilises messenger RNAs modified with N6-methyladenosine.^[7]

Clinical significance

YBX1 is a potential drug target in cancer therapy.^[8] YB-1 helps the replication of adenovirus type 5, a commonly used vector in gene therapy.^[8] Thus, YB-1 can cause an "oncolytic" effect in YB-1 positive cancer cells treated with adenoviruses.

Interactions

Y box binding protein 1 has been shown to interact with:

References

^ ^a ^b ^c GRCh38: Ensembl release 89: ENSG00000065978 – Ensembl, May 2017
^ ^a ^b ^c GRCm38: Ensembl release 89: ENSMUSG00000028639 – Ensembl, May 2017
^ "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
^ "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
^ EntrezGene 4904 YBX1 Y-box binding protein 1
^ Kwon E, Todorova K, Wang J, Horos R, Lee KK, Neel VA, et al. (April 2018). "The RNA-binding protein YBX1 regulates epidermal progenitors at a posttranscriptional level". Nature Communications. 9 (1): 1734. Bibcode:2018NatCo...9.1734K. doi:10.1038/s41467-018-04092-0. PMC 5928080. PMID 29712925.
^ Feng M, Xie X, Han G, Zhang T, Li Y, Li Y, et al. (July 2021). "YBX1 is required for maintaining myeloid leukemia cell survival by regulating BCL2 stability in an m6A-dependent manner". Blood. 138 (1): 71–85. doi:10.1182/blood.2020009676. PMC 8667054. PMID 33763698.
^ ^a ^b Lage H, Surowiak P, Holm PS (November 2008). "[YB-1 as a potential target in cancer therapy]". Der Pathologe (in German). 29 (Suppl 2): 187–190. doi:10.1007/s00292-008-1030-2. PMID 18773210.
^ ^a ^b Kojic S, Medeot E, Guccione E, Krmac H, Zara I, Martinelli V, et al. (May 2004). "The Ankrd2 protein, a link between the sarcomere and the nucleus in skeletal muscle". Journal of Molecular Biology. 339 (2): 313–325. doi:10.1016/j.jmb.2004.03.071. PMID 15136035.
^ Chernukhin IV, Shamsuddin S, Robinson AF, Carne AF, Paul A, El-Kady AI, et al. (September 2000). "Physical and functional interaction between two pluripotent proteins, the Y-box DNA/RNA-binding factor, YB-1, and the multivalent zinc finger factor, CTCF". The Journal of Biological Chemistry. 275 (38): 29915–29921. doi:10.1074/jbc.M001538200. PMID 10906122.
^ Okamoto T, Izumi H, Imamura T, Takano H, Ise T, Uchiumi T, et al. (December 2000). "Direct interaction of p53 with the Y-box binding protein, YB-1: a mechanism for regulation of human gene expression". Oncogene. 19 (54): 6194–6202. doi:10.1038/sj.onc.1204029. PMID 11175333.
^ Ise T, Nagatani G, Imamura T, Kato K, Takano H, Nomoto M, et al. (January 1999). "Transcription factor Y-box binding protein 1 binds preferentially to cisplatin-modified DNA and interacts with proliferating cell nuclear antigen". Cancer Research. 59 (2): 342–346. PMID 9927044.
^ Chibi M, Meyer M, Skepu A, G Rees DJ, Moolman-Smook JC, Pugh DJ (December 2008). "RBBP6 interacts with multifunctional protein YB-1 through its RING finger domain, leading to ubiquitination and proteosomal degradation of YB-1". Journal of Molecular Biology. 384 (4): 908–916. doi:10.1016/j.jmb.2008.09.060. PMID 18851979.
^ Raffetseder U, Frye B, Rauen T, Jürchott K, Royer HD, Jansen PL, et al. (May 2003). "Splicing factor SRp30c interaction with Y-box protein-1 confers nuclear YB-1 shuttling and alternative splice site selection". The Journal of Biological Chemistry. 278 (20): 18241–18248. doi:10.1074/jbc.M212518200. PMID 12604611.

External links

YBX1+protein,+human at the U.S. National Library of Medicine Medical Subject Headings (MeSH)

This article incorporates text from the United States National Library of Medicine, which is in the public domain.

[refGRCh38Ensembl-1] GRCh38: Ensembl release 89: ENSG00000065978 – Ensembl, May 2017

[refGRCm38Ensembl-2] GRCm38: Ensembl release 89: ENSMUSG00000028639 – Ensembl, May 2017

[3] "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.

[4] "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.

[5] EntrezGene 4904 YBX1 Y-box binding protein 1

[Kwon_2018-6] Kwon E, Todorova K, Wang J, Horos R, Lee KK, Neel VA, et al. (April 2018). "The RNA-binding protein YBX1 regulates epidermal progenitors at a posttranscriptional level". Nature Communications. 9 (1): 1734. Bibcode:2018NatCo...9.1734K. doi:10.1038/s41467-018-04092-0. PMC 5928080. PMID 29712925.

[7] Feng M, Xie X, Han G, Zhang T, Li Y, Li Y, et al. (July 2021). "YBX1 is required for maintaining myeloid leukemia cell survival by regulating BCL2 stability in an m6A-dependent manner". Blood. 138 (1): 71–85. doi:10.1182/blood.2020009676. PMC 8667054. PMID 33763698.

[Lage_2008-8] Lage H, Surowiak P, Holm PS (November 2008). "[YB-1 as a potential target in cancer therapy]". Der Pathologe (in German). 29 (Suppl 2): 187–190. doi:10.1007/s00292-008-1030-2. PMID 18773210.

[pmid15136035-9] Kojic S, Medeot E, Guccione E, Krmac H, Zara I, Martinelli V, et al. (May 2004). "The Ankrd2 protein, a link between the sarcomere and the nucleus in skeletal muscle". Journal of Molecular Biology. 339 (2): 313–325. doi:10.1016/j.jmb.2004.03.071. PMID 15136035.

[pmid10906122-10] Chernukhin IV, Shamsuddin S, Robinson AF, Carne AF, Paul A, El-Kady AI, et al. (September 2000). "Physical and functional interaction between two pluripotent proteins, the Y-box DNA/RNA-binding factor, YB-1, and the multivalent zinc finger factor, CTCF". The Journal of Biological Chemistry. 275 (38): 29915–29921. doi:10.1074/jbc.M001538200. PMID 10906122.

[pmid11175333-11] Okamoto T, Izumi H, Imamura T, Takano H, Ise T, Uchiumi T, et al. (December 2000). "Direct interaction of p53 with the Y-box binding protein, YB-1: a mechanism for regulation of human gene expression". Oncogene. 19 (54): 6194–6202. doi:10.1038/sj.onc.1204029. PMID 11175333.

[pmid9927044-12] Ise T, Nagatani G, Imamura T, Kato K, Takano H, Nomoto M, et al. (January 1999). "Transcription factor Y-box binding protein 1 binds preferentially to cisplatin-modified DNA and interacts with proliferating cell nuclear antigen". Cancer Research. 59 (2): 342–346. PMID 9927044.

[pmid18851979-13] Chibi M, Meyer M, Skepu A, G Rees DJ, Moolman-Smook JC, Pugh DJ (December 2008). "RBBP6 interacts with multifunctional protein YB-1 through its RING finger domain, leading to ubiquitination and proteosomal degradation of YB-1". Journal of Molecular Biology. 384 (4): 908–916. doi:10.1016/j.jmb.2008.09.060. PMID 18851979.

[pmid12604611-14] Raffetseder U, Frye B, Rauen T, Jürchott K, Royer HD, Jansen PL, et al. (May 2003). "Splicing factor SRp30c interaction with Y-box protein-1 confers nuclear YB-1 shuttling and alternative splice site selection". The Journal of Biological Chemistry. 278 (20): 18241–18248. doi:10.1074/jbc.M212518200. PMID 12604611.

[1]

[2]

[3]

[4]

[5]

[6]

[7]

[8]

[9]

[10]

[11]

[12]

[13]

[14]

Clinical significance

Interactions

References

Further reading

External links