User:Jts1882/phylogeny/Amphibia
This page has some taxonomy and phylogeny resources, including some cladograms from various sources, to aid editing Amphibia articles.
Amphibian references
[edit]Some useful taxonomy and phylogeny references.
- Amphibia
- Major groups of amphibia
Notes on superfamilies used by Feng et al (2017):
[edit]- Leiopelmatoidea: only needed if Ascaphidae considered a separate family from [[Leiopelmatidae. Frost et al (2006) suggest the name Amphicoela Noble, 1931 would be available if treating as two families.
- Discoglossoidea: including Alytidae and Bombinatoridae. Not sure why the Discoglossus family group name is the superfamily and the Alytus name for the family. Frost et al (2006) use Costata Lataste, 1879.
- Pipoidea: including Pipidae and Rhinophrynidae. This is consistent with taxonomies of Ford & Cannatella (1993) and Frost et al (2006), althought the latter prefers Xenoanura Savage 1973.
- Pelobatoidea: including Pelobatidae, Scaphiopodidae, Megophryidae, and Pelodytidae. This is consistent with taxonomy of Ford & Cannatella (1993), although scaphiopodids were still then included within pelobatids. Frost et al (2006) prefers Anomocoela for the four family group and uses Pelobatoidea more narrowly.
- Neobatrachia
- Sooglossoidea: including Sooglossidae and Nasikabatrachidae
- Hyloidea or Hyloides. Hyloides was defined by Frost at al (2006) to include Sooglossidae (including nasikabatrachids) and Australobatrachia. Subsequent authors use Hyloidea for the taxon that Frost et al (2006) called Nobleobatrachia.
- Hyloidea (sensu stricto) of Biju and Bossuyt (2003) and Darst and Cannatella (2004) (according to Frost et al, 2006). Now general agreement on composition of Hyloidea with Heleophrynidae excluded from the earlier paraphyletic taxon.
- Terrarana or Brachycephaloidea
- Several newly proposed taxa: Amazorana, Neoaustrarana, and Commutabirana (Streicher et al 2018). Some have support in previous phylogenetic studies, but names are new.
- Australobatrachia – introduced by Frost at al (2006) as a monophyletic taxon composed Batrachophrynidae Cope, 1875 (including Calyptocephalellinae Reig, 1960) and Myobatrachoidea Schlegel, 1850 (including Limnodynastidae Lynch, 1971, and Myobatrachidae Schlegel, 1850).
- Hyloidea (sensu stricto) of Biju and Bossuyt (2003) and Darst and Cannatella (2004) (according to Frost et al, 2006). Now general agreement on composition of Hyloidea with Heleophrynidae excluded from the earlier paraphyletic taxon.
- Ranoidea – general agreement on the circumscription (with Sooglossoidea excluded) since Ford & Cannatella (1993); and on three main divisions:
- Microhylidae
- Afrobatrachia [=epifamily Brevicipitoidae] – includes Brevicipitidae, Hemisotidae, Hyperoliidae, and Arthroleptidae. Originally described by Frost et al (2006).
- Natatanura [=epifamily Ramoidae] – includes remaining ranoid families (~14 families). Originally described by Frost et al (2006).
- Some recent evidence for African, Indian and cosmopolitan clades, but not named.
N.B. Zhang et al (2013)[9] have a taxonomy section where they justify the current use of Ranoidea and Hyloidea. They also argue use of some existing and well-established names: Pelobatoidea rather than Anomocoela; Leiopelmatoidea rather than Amphicoela; Pipoidea rather than Xenoanura. Unfortunately they are muddled about Discoglossoidea or Bombinatoroidea, using the first in the text and the latter in the figures.
Test collapse
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Some examples of interactive clades in large phylogenies: Birds, Snakes & Lizards and Flowering Plants.
Comparison of Amphibian phylogenies
[edit]Compares the three main large-scale molecular studies.
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- ^ a b Frost, Darrel R.; Grant, Taran; Faivovich, Julián; Bain, Raoul H.; Haas, Alexander; Haddad, Celio F. B.; De Sa, Rafael O.; Channing, A.; Wilkinson, Mark; Donnellan, Stephen C.; Raxworthy, Christopher J.; Campbell, Jonathan A.; Blotto, Boris L.; Moler, Paul; Drewes, Robert C.; Nussbaum, Ronald A.; Lynch, John D.; Green, David M.; Wheeler, Ward C. (2006). "The amphibian tree of life" (PDF). Bulletin of the American Museum of Natural History. No. 297: 8–370. doi:10.5531/sd.sp.13.
{{cite journal}}:|volume=has extra text (help) - ^ a b Alexander Pyron, R.; Wiens, John J. (2011). "A large-scale phylogeny of Amphibia including over 2800 species, and a revised classification of extant frogs, salamanders, and caecilians". Molecular Phylogenetics and Evolution. 61 (2): 543–583. doi:10.1016/j.ympev.2011.06.012. ISSN 1055-7903.
- ^ Frost, Darrel R. "ASW Home". Amphibian Species of the World, an Online Reference. Version 6.0. American Museum of Natural History, New York. Retrieved 1 October 2019.
- ^ "AmphibiaWeb Family Taxonomy". AmphibiaWeb. University of California, Berkeley. Retrieved 1 October 2019.
- ^ a b c Mark Wilkinson; Diego San Mauro; Emma Sherratt; David J. Gower (2011). "A nine-family classification of caecilians (Amphibia: Gymnophiona)". Zootaxa. 2874: 41–64. doi:10.11646/zootaxa.2874.1.3.
- ^ a b c "Discovery of a new family of amphibians from northeast India with ancient links to Africa". Proceedings of the Royal Society of London. Series B, Biological Sciences. 79 (1737): 2396–2401. 2012. doi:10.1098/rspb.2012.0150. PMC 3350690. PMID 22357266.
{{cite journal}}: Unknown parameter|authors=ignored (help) - ^ a b c San Mauro, D.; Gower, D. J.; Müller, H.; Loader, S. P.; Zardoya, R.; Nussbaum, R. A.; Wilkinson, M. (2014). "Life-history evolution and mitogenomic phylogeny of caecilian amphibians". Molecular Phylogenetics and Evolution. 73: 177–189. doi:10.1016/j.ympev.2014.01.009. hdl:10261/123960. PMID 24480323.
- ^ a b c Feng, Yan-Jie; Blackburn, David C.; Liang, Dan; Hillis, David M.; Wake, David B.; Cannatella, David C.; Zhang, Peng (2017). "Phylogenomics reveals rapid, simultaneous diversification of three major clades of Gondwanan frogs at the Cretaceous–Paleogene boundary". Proceedings of the National Academy of Sciences. 114 (29): E5864–E5870. doi:10.1073/pnas.1704632114. PMC 5530686. PMID 28673970.
- ^ a b Zhang, Peng; Liang, Dan; Mao, Rong-Li; Hillis, David M.; Wake, David B.; Cannatella, David C. (2013). "Efficient Sequencing of Anuran mtDNAs and a Mitogenomic Exploration of the Phylogeny and Evolution of Frogs". Molecular Biology and Evolution. 30 (8): 1899–1915. doi:10.1093/molbev/mst091. ISSN 1537-1719.
- ^ a b Streicher, Jeffrey W.; Miller, Elizabeth C.; Guerrero, Pablo C.; Correa, Claudio; Ortiz, Juan C.; Crawford, Andrew J.; Pie, Marcio R.; Wiens, John J. (2018). "Evaluating methods for phylogenomic analyses, and a new phylogeny for a major frog clade (Hyloidea) based on 2214 loci". Molecular Phylogenetics and Evolution. 119: 128–143. doi:10.1016/j.ympev.2017.10.013. ISSN 1055-7903.
- ^ a b Yuan, Zhi-Yong; Zhang, Bao-Lin; Raxworthy, Christopher J; Weisrock, David W; Hime, Paul M; Jin, Jie-Qiong; Lemmon, Emily M; Lemmon, Alan R; Holland, Sean D; Kortyna, Michelle L; Zhou, Wei-Wei; Peng, Min-Sheng; Che, Jing; Prendini, Elizabeth (2019). "Natatanuran frogs used the Indian Plate to step-stone disperse and radiate across the Indian Ocean". National Science Review. 6 (1): 10–14. doi:10.1093/nsr/nwy092. ISSN 2095-5138.
- ^ Cite error: The named reference
Hime-2021was invoked but never defined (see the help page).