User:Daniel Mietchen/Talks/COASP 2014
Open Access as part of the wider open ecosystem
Watch the video
History
[edit]- Some previous talks
- in this room (2012)
- at COASP: 2010/ 2012
- Future of publishing (2012)
- JATS-Con (2014)
Warmup: show of hands
[edit]- Number of people in the audience?
- 86
- Who has ever written a research article that finally got published?
- 60
- Who has ever written a research article that finally got published under an open license?
- 13
- Who has ever reviewed a research article?
- 24
- Who has ever signed their review of a research article?
- 6
- Who has ever used research datasets or scientific software published by others?
- 33
- Who has ever contributed to research datasets or scientific software published under an open license?
- 8.5
- Who has ever got scooped?
- 2
- Who has ever read a Wikipedia article (in any language)?
- 86
- Who has ever contributed to a Wikipedia article (in any language)?
- 22
Format
[edit]Vision: Open science
[edit]Quotes
[edit]What have others said on the topic? |
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Reality today
[edit]- A figure from a recent paper:[1]
A water droplet surviving an attempt to be cut by a knife. (view stats) | A water droplet cut by a knife. (view stats) |
Stats
[edit]- Altmetrics inspiration
- Start GLAMorous: 1 2
- Wikipedia Cite-o-Meter
- We're working on identifiers
- Check GLAMorous: Open access (publishing)
- BaGLAMa: Open access
Open Access Media Importer
[edit]An example of open science - from the grant proposal to all outputs.
- commons:User:Open Access Media Importer Bot (OAMI)
- Check GLAMorous OAMI
- BaGLAMa
- Expansion to full-text import
- Wikipedia Zero
- Wikisource is included
- SciELO content is available in JATS, soon in PMC
- Problem: Inconsistent XML as a Barrier to Reuse of Open Access Content[3]
- JATS4R is trying to address this
How things could be
[edit]A specification anyone can edit:
Dynamics
[edit]- Research is a process. The scientific journal of the future provides a platform for continuous and rapid publishing of workflows and other information pertaining to a research project, and for updating any such content by its original authors or collaboratively by relevant communities. Eventually, all scientific records should have a public version history or a public justification for not having one.
- example
- Updates automatically (interview)
- Version of record
- Ten Simple Rules for Better Figures
- Composite bitmap figures inhibit reuse
- kinds of reuse
- Editable format (SVG; blog post on the topic)
- Data and code on GitHub under open licenses
- PLOS Computational Biology Topic Pages (list)
- The workflows include writing of research documents, as piloted by the Biodiversity Data Journal.[4]
Scope
[edit]- Data come in many different formats. The scientific journal of the future interoperates with databases and ontologies by way of open standards and concentrates on the contextualization of knowledge newly acquired through research, without limiting its scope in terms of topic or methodology.
- another example: citizen science
Access
[edit]- Free access to scientific knowledge, and permissions to re-use and re-purpose it, are an invaluable source for research, innovation and education. The scientific journal of the future provides legally and technically barrier-free access to its contents, along with options for re-use and re-purposing that are stated clearly for both humans and machines.
- "Academic publishing is no guarantee of anything, except possibly the paywalled obsolescence of your work." (WebCite copy)
- Open Access Media Importer Bot (ASAP award winner)
- Leibniz @Wikimedia
- Open Access @Wikimedia
Replicability
[edit]- Open access to all relevant core elements of a publication facilitates the verification and subsequent re-use of published content. The scientific journal of the future requires the publication of detailed methodologies — including all data and code — that form the basis of any research project.
- NIH plans to enhance reproducibility[7]
Review
[edit]- The critical, transparent and impartial examination of information submitted by the professional community enhances the quality of publications. The scientific journal of the future supports post-publication peer review, and qualified reviews of submitted content shall always be made public.
- example[8]
- public peer review[9]
- public review of grant proposals
Presentation
[edit]- Digitization opens up new opportunities to provide content, such as through semantic and multimedia enrichment. The scientific journal of the future adheres to open Web standards and creates a framework in which the technological possibilities of digital media can be exploited by authors, readers and machines alike, and content remains continuously linkable.
- .
- Interactive presentation using Lens
- Composition of plates on the fly (as opposed to static composite figures)
Transparency
[edit]- Disclosure of conflicts of interest creates transparency. The scientific journal of the future promotes transparency by requiring its editorial board, the editors and the authors to disclose both existing and potential conflicts of interest with respect to a publication and to make explicit their contributions to any publication.
Sustainability
[edit]- Resources are limited. Ecological considerations are reflected in the design and production of the scientific journal of the future.
Flexibility
[edit]- Innovation is stifled by inflexible rules. Exceptions to the above rules are possible if justified in public.
- examples
References
[edit]- ^ Lescroël, A. L.; Ballard, G.; Grémillet, D.; Authier, M.; Ainley, D. G. (2014). Descamps, Sébastien (ed.). "Antarctic Climate Change: Extreme Events Disrupt Plastic Phenotypic Response in Adélie Penguins". PLoS ONE. 9 (1): e85291. doi:10.1371/journal.pone.0085291. PMC 3906005. PMID 24489657.
{{cite journal}}
: CS1 maint: unflagged free DOI (link) - ^ Yanashima, R.; García, A. A.; Aldridge, J.; Weiss, N.; Hayes, M. A.; Andrews, J. H. (2012). Docoslis, Aristides (ed.). "Cutting a Drop of Water Pinned by Wire Loops Using a Superhydrophobic Surface and Knife". PLoS ONE. 7 (9): e45893. doi:10.1371/journal.pone.0045893. PMC 3454355. PMID 23029297.
{{cite journal}}
: CS1 maint: unflagged free DOI (link) - ^ Mietchen, D.; Maloney, C.; and Moskopp, N. D. (2013) Inconsistent XML as a Barrier to Reuse of Open Access Content. Journal Article Tag Suite Conference (JATS-Con) Proceedings 2013.
- ^ Smith, V.; Georgiev, T.; Stoev, P.; Biserkov, J.; Miller, J.; Livermore, L.; Baker, E.; Mietchen, D.; Couvreur, T. L. P.; Mueller, G.; Dikow, T.; Helgen, K. M.; Frank, J. I.; Agosti, D.; Roberts, D.; Penev, L. (2013). "Beyond dead trees: integrating the scientific process in the Biodiversity Data Journal". Biodiversity Data Journal. 1: e995. doi:10.3897/BDJ.1.e995.
{{cite journal}}
: CS1 maint: unflagged free DOI (link) - ^ Stoev, P.; Komerički, A.; Akkari, N.; Liu, S.; Zhou, X.; Weigand, A. M.; Hostens, J.; Hunter, C. I.; Edmunds, S. C.; Porco, D.; Zapparoli, M.; Georgiev, T.; Mietchen, D.; Roberts, D.; Faulwetter, S.; Smith, V.; Penev, L. (2013). "Eupolybothrus cavernicolus Komerički & Stoev sp. N. (Chilopoda: Lithobiomorpha: Lithobiidae): The first eukaryotic species description combining transcriptomic, DNA barcoding and micro-CT imaging data". Biodiversity Data Journal. 1: e1013. doi:10.3897/BDJ.1.e1013.
{{cite journal}}
: CS1 maint: unflagged free DOI (link) - ^ Williams, J. T.; Carpenter, K. E.; Van Tassell, J. L.; Hoetjes, P.; Toller, W.; Etnoyer, P.; Smith, M. (2010). Gratwicke, Brian (ed.). "Biodiversity Assessment of the Fishes of Saba Bank Atoll, Netherlands Antilles". PLoS ONE. 5 (5): e10676. doi:10.1371/journal.pone.0010676. PMC 2873961. PMID 20505760.
{{cite journal}}
: CS1 maint: unflagged free DOI (link) CC0 full text media metadata - ^ Collins, F. S.; Tabak, L. A. (2014). "Policy: NIH plans to enhance reproducibility". Nature. 505 (7485): 612. doi:10.1038/505612a. PMC 4058759. PMID 24482835.
- ^ "Reviewer's Comments". Journal of Applied Behavior Analysis. 7 (3): 497–1453. 1974. doi:10.1901/jaba.1974.7-497b.
- ^ Mietchen, D.; Keupp, H.; Manz, B.; Volke, F. (2005). "Non-invasive diagnostics in fossils - Magnetic Resonance Imaging of pathological belemnites". Biogeosciences. 2 (2): 133. doi:10.5194/bg-2-133-2005.
{{cite journal}}
: CS1 maint: unflagged free DOI (link)
About
[edit]This page belongs to a super-outstanding talk given on September 19, 2014, as part of OASPA's 2014 conference (COASP 2014) at the UNESCO in Paris.
Contact
[edit]- Institutional
- @EvoMRI on Twitter
- Wikipedia talk page
- Wikipedia email