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Summary

Description
English: Plot first appeared in https://www.science.org/doi/10.1126/science.aal3618

Code modified from https://statmodeling.stat.columbia.edu/2017/02/11/measurement-error-replication-crisis/ https://statmodeling.stat.columbia.edu/wp-content/uploads/2017/02/graph-codes-to-share-for-science-paper-final.txt

```r

  1. Load necessary library

library(svglite)

  1. Set up SVG device

svg("three_plots_side_by_side.svg", width = 15, height = 5)

  1. Set up 1x3 layout

par(mfrow = c(1, 3))

  1. First just the original two plots, high power N = 3000, low power N = 50, true slope = .15

r <- .15 sims <- array(0, c(1000, 4)) xerror <- 0.5 yerror <- 0.5 for (i in 1:1000) {

 x <- rnorm(50, 0, 1)
 y <- r*x + rnorm(50, 0, 1)
 xx <- lm(y~x)
 sims[i,1] <- summary(xx)$coefficients[2,1]
 x <- x + rnorm(50, 0, xerror)
 y <- y + rnorm(50, 0, yerror)
 xx <- lm(y~x)
 sims[i,2] <- summary(xx)$coefficients[2,1]
 
 x <- rnorm(3000, 0, 1)
 y <- r*x + rnorm(3000, 0, 1)
 xx <- lm(y~x)
 sims[i,3] <- summary(xx)$coefficients[2,1]
 x <- x + rnorm(3000, 0, xerror)
 y <- y + rnorm(3000, 0, yerror)
 xx <- lm(y~x)
 sims[i,4] <- summary(xx)$coefficients[2,1]

}

  1. First plot

plot(sims[,2] ~ sims[,1], ylab="Observed with added error", xlab="Ideal Study") abline(0, 1, col="red")

  1. Second plot

plot(sims[,4] ~ sims[,3], ylab="Observed with added error", xlab="Ideal Study") abline(0, 1, col="red")

  1. third graph
  2. run 2000 regressions at points between N = 50 and N = 3050

r <- .15 propor <- numeric(31) powers <- seq(50, 3050, 100) xerror <- 0.5 yerror <- 0.5 for (j in 1:31) {

 sims <- array(0, c(1000, 4))
 for (i in 1:1000) {
   x <- rnorm(powers[j], 0, 1)
   y <- r*x + rnorm(powers[j], 0, 1)
   xx <- lm(y~x)
   sims[i,1:2] <- summary(xx)$coefficients[2,1:2]
   x <- x + rnorm(powers[j], 0, xerror)
   y <- y + rnorm(powers[j], 0, yerror)
   xx <- lm(y~x)
   sims[i,3:4] <- summary(xx)$coefficients[2,1:2]
 }
 
 # find significant observations (t test > 2) and then check proportion
 temp <- sims[abs(sims[,3]/sims[,4]) > 2,]
 propor[j] <- table((abs(temp[,3]/temp[,4]) > abs(temp[,1]/temp[,2])))[2]/length(temp[,1])
 
 print(j)

}

  1. Third plot

plot(powers, propor, type="l", xlab="Sample Size", ylab="Prop where error slope greater", col="blue")

  1. Close the SVG device

dev.off()

```
Date
Source https://statmodeling.stat.columbia.edu/wp-content/uploads/2017/02/graph-codes-to-share-for-science-paper-final.txt
Author Andrew Gelman

Licensing

w:en:Creative Commons
attribution
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You are free:
  • to share – to copy, distribute and transmit the work
  • to remix – to adapt the work
Under the following conditions:
  • attribution – You must give appropriate credit, provide a link to the license, and indicate if changes were made. You may do so in any reasonable manner, but not in any way that suggests the licensor endorses you or your use.

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Distribution of statistically significant estimates in the presence of added error.

In dieser Datei abgebildete Objekte

depicts

11 February 2017

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